Coconut diversity based on chloroplast Single Nucleotide Amplified Polymorphism (SNAP) and Insertion-Deletion (InDel) markers

Abstract. Rahmawati A, Dinarti D, Maskromo I, Volkaert HA, Sudarsono. 2022. Coconut diversity based on chloroplast Single Nucleotide Amplified Polymorphism (SNAP) and Insertion-Deletion (InDel) markers. Biodiversitas 23: 4073-4081. Indonesia is known as a country rich in biodiversity, species with high existing coconut (Cocos nucifera L.). Although the of Indonesian recognized, information about its genetics limited. The genetic relationship between their maternal inheritance important has not been widely studied. This study aimed to analyze using SNAP InDel markers, evaluate haplotype diversity. Sixty-four accessions were evaluated ten primers five cpDNA. All successfully amplified cpDNA most accessions. Based six haplotypes observed Cocos nucifera. Phylogenetic analysis combined markers divided 64 into three clusters. marker results showed that they are less informative for evaluating On other hand, more useful evaluation. Therefore, genomes potential future variation analysis, evolutionary study, DNA fingerprinting. should contribute understanding origins evolution.